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mzTab

mzTab is one of the standards developed by members of the Proteomics Informatics working group of the PSI. mzTab-M is a separate standard for Metabolomics and small molecules developed by members of the Proteomics Informatics working group of the PSI and the Data Standards Task Group of the Metabolomics Society.

For general information of the activities and the organization of this working group see HERE.

Contents

    1. mzTab-M 2.1.0 (Draft Version): Specification documents
    2. mzTab-M 2.0.0 (Final Version): Specification documents
    3. mzTab-M Tools and Implementations
    4. mzTab 1.0.0 (Final Version): Specification documents
    5. mzTab Tools and Implementations

Proteomics

mzTab 1.0.0 (Final Version): Specification documents

Submitted originally to the PSI document process on May 2012. Final version 1.0.0 accepted on June 2014.

More documentation is available in the mzTab Github project at https://github.com/HUPO-PSI/mzTab

Direct links to deliverables:

mzTab Tools and Implementations

  • jmzTab: A Java API to read, write and merge mzTab files (link)
  • LipidDataAnalyzer: Tool to quantify lipids from LC-MS data (link)
  • OpenMS: Open-source software C++ library for LC/MS data management and analyses (link)
  • MSnBase: Bioconductor package. Basic plotting, data manipulation and processing of MS-based Proteomics data (link)
  • PRIDE Converter 2: A redesign of the PRIDE Converter tool, for performing data submissions to the PRIDE database (link)
  • MaxQuant: A quantitative proteomics software package designed for analyzing large mass-spectrometric data sets (link)
  • PIA: A toolbox for MS based protein inference and identification analysis (link),  PMID:25938255

Tags

Specifications

Proteomics Informatics

Mass Spectrometry

Metabolomics Informatics

Metabolomics & Small Molecules

mzTab-M 2.1.0 (Draft Version): Specification documents

Not submitted to the PSI document process yet.

More documentation is available in the mzTab Github project at https://github.com/HUPO-PSI/mzTab

mzTab-M 2.0.0 (Final Version): Specification documents

Submitted originally to the PSI document process on October 31st, 2018. Final version 2.0.0 accepted on March 28th, 2019.

More documentation is available in the mzTab Github project at https://github.com/HUPO-PSI/mzTab

Direct links to deliverables:

mzTab-M Tools and Implementations

  • jmzTab-M: A Java API to read, write and merge mzTab-M files (link)
  • LipidDataAnalyzer: Tool to quantify lipids from LC-MS data (link)
  • GNPS: The Global Natural Products Social Molecular Networking Database (link)
  • MS-DIAL: A universal program for untargeted metabolomics (link)
  • MetaboAnalyst: A comprehensive platform dedicated for metabolomics data analysis via user-friendly, web-based interface (link)