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Documents in progress

  • mzIdentML version 1.3.0 in public review
  • mzSpecLib in anticipation of becoming formal standard

See more details on these documents in progress.

 

HUPO PSI meeting 2024

Register now for the HUPO PSI meeting 2024!

The PSI meeting 2024 will take place from March 18-20th 2024 at the Kyoto University, Japan.

The meeting is sponsored by JPOST (JST-NBDC) and JPDM (JSPS). Registration is now open!

Please note, the Molecular Interaction workgroup will meet virtually this year. Please register, as normal, and we will finalise timings subject to the geographic location of participants.


HUPO-PSI Working groups and Outputs

The HUPO Proteomics Standards Initiative defines community standards for data representation in proteomics and interactomics to facilitate data comparison, exchange and verification.

Working GroupsGuidelinesv.Formatsv.Controlled Vocabularies v.

Molecular
Interactions
Group charter

MIMIx
MIABE
MIAPAR

1.1.2
1.0.0
1.0.0

PSI-MI XML
PSI-MI XML
MITAB


2.5.4

3.8.8
2.7
2.8

PSI-MI CV 

2.5.0

Mass Spectrometry
Group charter

 

Proteomics Informatics
Group charter

Mass spectrometry (MIAPE-MS) 
Identification (MIAPE-MSI)
Mass spectrometry Quantification (MIAPE-Quant)

2.98
1.1
1.0

mzML
TraML 
mzData
mzIdentML 
mzQuantML* 
mzTab 
proBed 
proBAM 
PEFF 
USI
SDRF-Proteomics
mzSpecLib (in development)
ProForma  (in development)

1.1.0
1.0.0
1.05
1.2.0
1.0.1
1.0.0
1.0.0
1.0.0
1.0.0
1.0.0

PSI-MS 
XLMOD 

4.0.15
1.1.0

Quality Control
Group charter
  mzQC1.0.0  
Disordered Proteins
Group charter
Minimum Information About Disorder Experiments (MIADE)1.0     
Protein Separation
(Inactive)

Gel electrophoresis (MIAPE-GE) 
Gel informatics (MIAPE-GI) 
Column chromatography (MIAPE-CC) 
Capillary electrophoresis (MIAPE-CE) 
Phosphoproteomics (MIASSPE) 

1.4
1.0
1.1
0.9.3
0.9

GelML 
spML 
1.1.0
1.0.0
sepCV 1.0.0

* deprecated