New Working Group: Making Proteomics AI-Ready
The HUPO-PSI AI-readiness Working Group has launched, bringing together researchers to make public proteomics data more usable for AI through better metadata, formats, and reprocessing workflows. Chaired by Tine Claeys, with co-chairs Samuel Wein and Ralf Gabriels, the group welcomes anyone interested in shaping practical, community-driven solutions. Get involved and follow our progress!
Documents in progress and new documents
- The mzQC format, a data standard for reporting and exchanging quality-related information in biological mass spectrometry, has been been released on February 21st, 2024
- The mzIdentML 1.3.0 specification and its crosslinking extension have been released on July 4th, 2024.
- mzSpecLib in anticipation of becoming formal standard
See more details on these documents in progress.
HUPO-PSI Working groups and Outputs
The HUPO Proteomics Standards Initiative defines community standards for data representation in proteomics and interactomics to facilitate data comparison, exchange and verification.
| Working Groups | Guidelines | v. | Formats | v. | Controlled Vocabularies | v. |
Molecular | 1.1.2 | 2.5.4 | 2.5.0 | |||
Mass Spectrometry
Proteomics Informatics | Mass spectrometry (MIAPE-MS) | 2.98 | mzML | 1.1.0 | 4.0.15 | |
| Quality Control Group charter | mzQC | 1.0.0 | ||||
| Disordered Proteins Group charter | Minimum Information About Disorder Experiments (MIADE) | 1.0 | ||||
| Protein Separation (Inactive) | Gel electrophoresis (MIAPE-GE) | 1.4 | GelML spML | 1.1.0 1.0.0 | sepCV | 1.0.0 |
| AI-readiness Group charter | – | – | – | – | – | – |
†deprecated, * in development