HUPO-PSI Spring Meeting 2025
The next HUPO-PSI Spring Meeting will take place at the University of Tuebingen, Germany from March 31st-April 3rd. The event will kick off with two days of hands-on workshop sessions on the use of machine-learning in MS-based proteomics, interactions and related areas.
Documents in progress and new documents
- The mzQC format, a data standard for reporting and exchanging quality-related information in biological mass spectrometry, has been been released on February 21st, 2024
- The mzIdentML 1.3.0 specification and its crosslinking extension have been released on July 4th, 2024.
- mzSpecLib in anticipation of becoming formal standard
See more details on these documents in progress.
HUPO-PSI Working groups and Outputs
The HUPO Proteomics Standards Initiative defines community standards for data representation in proteomics and interactomics to facilitate data comparison, exchange and verification.
| Working Groups | Guidelines | v. | Formats | v. | Controlled Vocabularies | v. |
|
Molecular |
1.1.2 |
2.5.4 |
2.5.0 |
|||
|
Mass Spectrometry
Proteomics Informatics |
Mass spectrometry (MIAPE-MS) |
2.98 |
mzML TraML mzData* mzIdentML mzQuantML* mzTab mzTab-M proBed proBAM PEFF USI SDRF-Proteomics mzSpecLib (in development) ProForma |
1.1.0 |
4.0.15 |
|
| Quality Control Group charter |
mzQC | 1.0.0 | ||||
| Disordered Proteins Group charter |
Minimum Information About Disorder Experiments (MIADE) | 1.0 | ||||
| Protein Separation (Inactive) |
Gel electrophoresis (MIAPE-GE) |
1.4 |
GelML spML |
1.1.0 1.0.0 |
sepCV | 1.0.0 |
* deprecated