Quality Control

Quality Control Working Group Charter

Submitted: 2016-06-27

Template Rev2016b

1.Administrative Section

Status (New/Update): New 

Group Name:

A group name should be reasonably descriptive or identifiable.  Additionally, the group must define an acronym (maximum of 8 printable ASCII characters) to reference the group in the PSI directories, mailing lists, and general documents.  The name and acronym must not conflict with any other PSI name and acronym.

HUPO PSI Quality Control Working Group (PSI-QC WG)

 

Chair (with affiliation and current email address):

David L. Tabb, Stellenbosch University, South Africa (dtabb@sun.ac.za)

Co-Chairs (1 or 2) (with affiliation and current email address):

Mathias Walzer, Universität Tübingen, Germany (walzer@informatik.uni-tuebingen.de)

Stefan Tenzer, Gutenberg Universität, Germany (tenzer@uni-mainz.de)

Secretary:

Wout Bittremieux, Universiteit Antwerpen, Belgium (wout.bittremieux@uantwerpen.be) 

Other officers (optional) (with affiliation and current email address):

Editor(s): Stefan Tenzer, Gutenberg Universität, Germany (tenzer@uni-mainz.de)

Minimal Reporting Requirements Coordinator(s): Weimin Zhu, Beijing Proteome Research Center (wmzhuworld@gmail.com) and Reza Salek, European Bioinformatics Institute (reza.salek@ebi.ac.uk)

Ontology Coordinator(s): Martin Eisenacher, Ruhr-Universität
(martin.eisenacher@rub.de)

Web site Maintainer(s): Mathias Walzer, Universität Tübingen, Germany (walzer@informatik.uni-tuebingen.de)

 

Mailing list

psi-qc-dev@lists.sourceforge.net

 
 2.Description and objectives
 

Focus and Purpose 

The PSI-QC working group is composed of academic, government, and industry researchers, software developers, journal representatives, and instrument manufacturers. The main goal of the PSI-QC working group is to define a community data format and associated controlled vocabulary terms, facilitating data exchange and archiving of mass spectrometry derived quality control metrics.

 

Current projects of the PSI-QC working group are:

- The qcML format, which has been developed as a standardized format for the exchange, transmission, and archiving of quality control metrics derived from mass spectrometry.

- Controlled Vocabulary development: controlled vocabulary terms are developed in common with the PSI-MS and PSI-PI groups. 

Goals/Milestones

- Goal 1: submit a perspective manuscript to a journal in the field to announce the PSI-QC WG (~3 months)

- Goal 2: analyze and revise the already published qcML format for submission to the PSI document process (~6 months)

- Goal 3: re-evaluate the CV terms used for qcML, and consolidate the location for these terms in light of the existing PSI-MS CV (~6 months)

- Goal 4: adapt the already published jqcML library to handle the updates to qcML and the CV terms; implement validation (~6 months)

- Goal 5: implement qcML output from several freely available quality metric tools (e.g., QuaMeter, OpenMS) (~8 months)

- Goal 6: establish the revised qcML format and associated CV terms as a HUPO-PSI standard, by submitting the standard to the PSI Document Process (~9 months)

 

Website:

http://www.psidev.info/groups/quality-control


Tags: 

Quality Control Workgroup

HUPO Proteomics Standards Initiative
Quality Control Working Group (PSI-QC)

Contents

  1. Quality Control Group Charter
  2. Group Structure (2017)
  3. Formats, Definitions, and Metrics
  4. Getting Involved

 

The PSI Quality Control workgroup is one of the working groups of the Proteomics Standards Initiative.

 

Quality Control Group Charter

Focus and Purpose

The PSI-QC working group is composed of academic, government, and industry researchers, software developers, journal representatives, and instrument manufacturers. The main goal of the PSI-QC working group is to define a community data format and associated controlled vocabulary terms, facilitating data exchange and archiving of mass spectrometry derived quality control metrics.

Current projects of the PSI-QC working group are:

  • The qcML format, which has been developed as a standardized format for the exchange, transmission, and archiving of quality control metrics derived from mass spectrometry.
  • Controlled Vocabulary development: controlled vocabulary terms are developed in common with the PSI-MS and PSI-PI groups.

Goals/Milestones 

  1. submit a perspective manuscript to a journal in the field to announce the PSI-QC WG  (PubMed link)

  2. analyze and revise the already published qcML format for submission to the PSI document process √ 

  3. re-evaluate the CV terms used for qcML, and consolidate the location for these terms in light of the existing PSI-MS CV

  4. adapt the already published jqcML library to handle the updates to qcML and the CV terms; implement validation

  5. implement qcML output from several freely available quality metric tools (e.g., QuaMeter, OpenMS)

  6. establish the revised qcML format and associated CV terms as a HUPO-PSI standard, by submitting the standard to the PSI Document Process

 


 

Group Structure (2017)

Role
Current Encumbent
ChairDavid L. Tabb
Co-chairMathias Walzer, Stefan Tenzer
MIAPE Co-ordinatorWeimin Zhu, Reza Salek
Ontology Co-ordinatorMartin Eisenacher
EditorStefan Tenzer
SecretaryWout Bittremieux
Website MaintainerMathias Walzer

 


Formats, Definitions, and Metrics

You can find the ongoing work and older versions of the qcML format, term definitions, and metric designs on our HUPO-PSI GitHub page.


Getting Involved

If you would like to contribute to the work of the Quality Control workgroup, or just to receive the occasional email when a new version of a format becomes available, please contact us on psidev-qc-dev [at] lists.sourceforge.net or our GitHub page.


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