PSI Editors

PSI-MI XML 3.0.0 in DocProc [handling editor: Martin Eisenacher]

2.) Resubmission
After synchronized journal publication the specification document has been resubmitted on April 18th, 2018 and comments requesting changes by the three reviewers have been checked by the editor.

Document was finalized on April 5th, 2018.


1.) Original submission (after steering group review)

There has been a submission to the PSI Document Process by the Molecular Interactions workgroup updating the PSI-MI format to version 3.0.0 (from long-time stable XML 2.5, released 2005).

MIAPE-MS in DocProc (Update type b) [handling editor: Martin Eisenacher]

The MIAPE-MS work group has submitted some changes for the
MIAPE-MS document after review feedback (comments and answers attached).
As these were minor changes, a new public review phase is not necessary.
As there were no further comments until 7th August 2012, the document status changed to "Final" (announced 15th August 2012).

mzTab in DocProc [handling editor: Martin Eisenacher]

8.) Suggestion after Editor Approval:

After inspection of changes (see comments in "R4_Answers_to_Reviewers_PSI_mzTab_R3_with_comments_of_PSI_editor.docx" file) recommendation to the steering committee on August 20th, 2014: accept the mzTab specification R4 without further changes.
September, 2nd, 2014: acceptance. Final version 1.0.0. was announced September 15th, 2014.

7.) Submission of revised version R4

MIAPE Quant in DocProc [handling editors: Christian Stephan / Martin Eisenacher]

Submission of Major Revision :

After considering the comments of one public and two invited reviewers attached is a revised version 0.9.2_RC of MIAPE-Quant (plus answers to reviewers and updated examples). 

It goes through two weeks of further review, which will be viewed and editored after 8th October 2012. Please send any comments about the changes to or add comments to this page.

Major Revision accepted on 18th October 2012; Final version 1.0 published on 24th October 2012).

mzQuantML in DocProc (original version 1.0.0-rc1 [acting handling editor: Pierre-Alain Binz]

Original submission:

This document defines an XML schema that can be used to describe the outputs of quantification software for proteomics (quantitative values about peptides and proteins) and potentially metabolomics (quantitative values about small molecules), derived from analysis of mass spectrometry data.

All example files can be downloaded manually from:

mzQuantml in DocProc (revised version 1.0.0_rc3) [acting handling editor: Pierre-Alain Binz]

The initial mzQuantML specifications were submitted to the PSI process in Nov 2011, as a version 1.0-rc1 release. External reviews were received and acted upon. An internal rc2 release was made, and a manuscript describing the rc2 release, submitted in parallel for (potential) journal publication. Here we report the re-submission of the mzQuantML version1.0-rc3 release, which, it is hoped, will be accepted as a stable standard, and moved to version 1.0 final status shortly.

mzQuantML 1.0.1 in DocProc [handling editor: Martin Eisenacher]

A modififed specification of the mzQuantML recommendation document was submitted to the PSI document process including the encoding of SRM quantification results. After careful consideration and discussion with the submitters I think it is minor and therefore version 1.0.1 (if you disagree, especially if existing software is made incompatible, please give me a note).

Please review the updated specification document below WITHIN TWO WEEKS and send any corrections or comments until April 12th to the handling editor martin.eisenacher<AT>