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HUPO Proteomics Standards Initiative logo

HUPO Proteomics Standards Initiative

HUPO-PSI april 2013: Meeting update (presentations + photos)

The HUPO Proteomics Standards Inititative defines community standards for data representation in proteomics to facilitate data comparison, exchange and verification.

 

HUPO-PSI Working Groups and Outputs

Working Groups Guidelines v. Formats v.  Controlled Vocabularies
 v.
Molecular Interactions MIMIx1.1.2 PSI-MI XML
(incl. MITAB)
2.5.4 PSI-MI CV2.5.0
MIABE1.0.0
MIAPAR1.0.0PSI-PAR1.0.0PAR CVn/a
Mass Spectrometry Mass spectrometry (MIAPE_MS)2.98 mzML1.1.0 PSI-MS3.45.0
TraML1.0.0
mzData (deprecated)1.05
Proteomics Informatics Identification (MIAPE-MSI)1.1 mzIdentML1.1.0
 Mass spectrometry Quantification (MIAPE-Quant)1.0
 mzQuantML1.0.0
Protein separations Gel electrophoresis (MIAPE-GE)1.4 

GelML

1.1.0 sepCV1.0.0
Gel informatics (MIAPE-GI)1.0
Column chromatography (MIAPE-CC)1.1spML1.0.0
 
 Capillary electrophoresis (MIAPE-CE)0.9.3
Phosphoproteomics (MIASSPE)0.9.

Public documents under revision

Joint activities

Annotation of protein modifications (PSI-Mod)
The MIAPE reporting guidelines for proteomics
HUPO-PSI controlled vocabulary development

The Proteomics Standards Initiative (PSI) is a part of the Human Proteome Organisation (HUPO)