HUPO-PSI 2010 Spring Meeting, Seoul, Korea
28-30 March 2010 (plus optional excursion March 31st)
Mission Statement
The PSI Spring meeting, now in its seventh year, is a hands-on workshop for the community-based development of data representation standards in Proteomics. Based on results of previous activities, the 2010 meeting in Seoul will focus on the further development of mzQuantML for the representation of quantitative mass spectrometry data, gelML and associated controlled vocabularies for protein separation, and PSICQUIC, a common query interface for molecular interaction data resources. The first day will be devoted to introductory talks and training sessions, the second and third day will focus on concrete, joint further development of the PSI standards.
The meeting registration is FREE, thanks to generous support from our sponsors.
Preliminary Agenda
Saturday, March 27, 2010
19:00-21:00 Evening reception at Kukdo Hotel (Sponsored by Agilent)
Sunday, March 28, 2010
09:30-13:00 Morning session
- 09:30 Opening Address:
Sang Yun Cho, National Institute of Health, Center for Genome Science, Korea (On behalf of local organizers) -
10:00 Welcome Address: Young-Ki Paik, President of HUPO, Yonsei Univ.
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10:15 Scientific Presentation: Myeong-Hee Yu, President of Functional Proteomics Consortium, KIST
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10:45 Coffee
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11:00 PSI overview: Organisation and document process: Christian Stephan
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11:20 Molecular Interactions: Henning Hermjakob, European Bioinformatics Institute, Cambridge, UK
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11:40 Protein Separations: Juan Pablo Albar, National Center for Biotechnology Madrid, Spain
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12:00 Mass spectrometry: Andrew Jones, University of Liverpool, UK
- 12:20 MIRIAM Resources: robust annotation and cross-referencing framework: Camille Laibe, EBI, Cambridge, UK
13:00 Lunch
14:00-17:00 Afternoon session: Total recall
Training and refresher session in parallel tracks, designed to refresh details PSI activities and concepts for experienced participants, and as an introduction for new participants.
- Molecular Interactions track: Bruno Aranda, EBI, Cambridge, UK
- The PSI MI XML schema: Structure, capabilities, and limitations
- The PSI MITAB format and PSIQUIC, the PSI Common Query Interface:
- Proteome Informatics track: Andy Jones, U. Liverpool UK & others TBC
- The mzIdentML schema, controlled vocabulary and mapping
- Status of implementations
- Protein Separation track:
- The gelML schema.
- Status of implementations
- Controlled vocabularies: sepCV
19:00-21:00: Meeting Dinner: Buffet Cruise Ship on the Han river.
- Move to Youido Port by subway
- Enjoy Jazz, Dinner and beautiful views of Seoul
Monday, March 29, 2010
- Molecular Interactions
- Tabular representation: MITAB 2.6
- Standardisation of usage
- Identification/removal of redundancy
- The PSI Common Query Interface: PSICQUIC.
- Implementation: Interface and Tools
- Proteome Informatics
- Minor fixes with the schema / CV
- Issues resulting from implementation
- Discussion of maximising uptake of the format
- Modelling on quantitation - mzQuantML
- Use cases to be covered
- Modelling structures require
- [Introduction] How to analyze proteome with mTRAQ, Cheol-Ju Lee (KIST)
- Protein Separation
- Discussion of gelInfoML development: new implementation or extension from gelML
- Molecular Interactions
- PSISCORE: PSI Common scoring system: Mario Albrecht, Max-Planck-Institut für Informatik, Saarbruecken, Germany
- Proteome Informatics
- Continue work on mzQuantML
- Protein Separation
- spML development: Planning for MIAPE CC and CE implementations and FuGElight adaptation
Tuesday, March 30, 2010
- Molecular Interactions
- Controlled vocabularies
- Proteome Informatics
- Continue work on mzQuantML
- Protein Separation
- Quick update/information session on MIAPE modules (GE, GI, CC, CE, MIASPPE).
- Some discussion/development on MIASPPE module.
- Molecular Interactions
- Excursion into Chemistry: How can we meaningfully integrate biological and biochemical data? Is an extended interacion map useful, or does it just add another layer to the hairball?
- Proteome Informatics
- Development plan for updates to mzIdentML and release schedule for mzQuantML (level 1)
- Protein Separation
- Open to any other discussion or development.
- Summaries from work groups
- Future plans
- Plans for HUPO 2010, Sydney, Australia
- End of meeting
Wednesday, March 31, 2010
- Gyeongbokgung Palace : The main residence and palace for many kings and royal families during the Joseon Dynasty.
- Korean Folk Village : The purpose of Korean Folk Village is to display elements of traditional Korean life and culture. There are multiple sections to the park. There are numerous replicas of traditional houses of the different social classes (peasant, landowner, yangban) and the various regions.
Information about the venue
The conference will be held in the International Corporation Building, KIST and accommodation will be
Best Western Kukdo Hotel, Seoul. The hotel is located in the city center and well connected to subway
(line #2, green line) and airport (Incheon Int. Airport). Delegates have a special ‘HUPO-PSI conference fee’
pricing arrangement at 130K KRW for a double, 110K KRW for a single room/night (including breakfast and
free internet connection (broad-band)). (10% of VAT will be added)
Everyone should make their own booking for the hotel room and use the booking code "HUPO-PSI" in the email subject line.
For the booking, please contact:
E-mail: resv@hotelkukdo.com
Tel: +82 (0)2 6466 1234
For more information (location, transition, and others) about the hotel see http://www.hotelkukdo.com/
** More pictures and detail comments about the venue and hotel, please visit to Google Album (Venue), Google Album (Hotel)
Information about Seoul
Seoul is the capital of Korea with over 600 years of history. It is the heart of Korea’s culture and education as well as politics and economics. Seoul is unique in that historical sites such as Gyeongbokgung Palace and modern cultural facilities coexist in harmony. Seoul is a world-class city with numerous amenities and shopping districts such as Myeong-dong and Apgujeong.
For more information about Korea and Seoul, please see: Korea Sparkling
** Please note that there are two steps to ensure you are booked into the HUPO-PSI meeting. You must register on this page for the meeting, and separately with the hotel. To help with the logistics, please register as soon as possible! ** For information please contact Sang Yun Cho, sangyun(at)yonsei.ac.kr
Organized by Korean Forum for Bioinformation Standardization (KFBS)
Hyperlinks
