| Project no: | 1200 |
| Project Title: | Draft TraML Specification |
| Opened by: | edeutsch |
| Opened on: | Thu, 05 February 2009 , 6:35 PM |
| Last modified: | Tue, 06 July 2010 , 10:17 PM |
| Add a case to this project: | Draft TraML Specification |
Case Description
The HUPO PSI Mass Spectrometry Standards Working Group (MSS WG) has begun developing a draft specification for a standardized format for the exchange and transmission of transition lists for selected reaction monitoring (SRM) experiments. This specification is still in an early draft form and feedback is actively desired. Please email the list psidev-ms-dev@lists.sourceforge.net with your comments and suggestions.
TraML Development Schedule
(updated 2010-07-01)
- 2009-02-05 TraML 0.1 draft posted
- 2009-04-27 HUPO PSI Annual Meeting
- 2009-08-10 TraML 0.9.0 draft posted
- 2009-10-27 TraML 0.9.1 draft posted
- 2009-11-19 TraML 0.9.2 draft posted
- 2010-01-04 TraML 0.9.3 draft posted
- 2010-01-05 TraML 0.9.3 draft corrected
- 2010-03-31 TraML 0.9.4 draft posted
- 2010-07-01 TraML 0.9.4 submitted as 1.0.0RC1 to PSI document process
- 2010-07-13 PSI WG conf call Tuesday 8am PDT
New TraML 0.9.4 Unfinished Specification
(updated 2010-07-01)
The information and documents in this subsection are related to TraML 0.9.4, currently in development in early 2010. Everyone is encouraged to examine and comment on the draft at any time.
XML schema definition files (.xsd):
- TraML0.9.4.xsd (main schema)
Documentation files:
- Full Specification Document: TraML0.9.4.1_specificationDocument.doc
- HTML schema documentation for TraML 0.9.4
- ASMS June 2009 Poster (3MB PPT)
Controlled Vocabulary and Mapping Files:
- Latest mapping file, which defines where certain controlled vocabulary terms may be used in a document.
- Latest development version of the CV (from CVS) in OBO 1.2 format (note that you can explore the file more easily using OBO-Edit) or you can explore the CV at BioPortal.
- Latest semantic validator mapping file (not yet available), which defines where certain controlled vocabulary terms may be used in a document (information page).
- A definition of ontologies can be found in ontologies.xml
Sample instance documents for all relevant formats:
- Yeast_ATAQS_gen.TraML (6 MB)
- Metabolomics_TSQ.TraML (out of date version 0.1)
Other resources:
- On-line TraML validator at OpenMS